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sbi-benchmark / sbibm

Simulation-based inference benchmark
https://sbi-benchmark.github.io
MIT License
88 stars 34 forks source link

Installation broken - pyabcranger issue #66

Open anastasiakrouglova opened 7 months ago

anastasiakrouglova commented 7 months ago

Hi,

I seem to have an issue on a MacOS 14.1 with Apple M3 Max.

If I run the installation of this package:

python -m pip install sbibm

This error originates from a subprocess and is similar to this issue: https://github.com/diyabc/abcranger/issues/96, opened last week.

My current Python version is 3.11.5. However, downgrading to Python 3.9.18 and 3.10.13 does not resolve the issue.

Collecting pyabcranger>=0.0.48 (from sbibm)
  Using cached pyabcranger-0.0.70.tar.gz (58 kB)
  Installing build dependencies ... done
  Getting requirements to build wheel ... error
  error: subprocess-exited-with-error

  × Getting requirements to build wheel did not run successfully.
  │ exit code: 1
  ╰─> [106 lines of output]
      PYTHON VERSION : 3.11
      running egg_info
      egg_info (cmake)
      writing dist/pyabcranger.egg-info/PKG-INFO
      writing dependency_links to dist/pyabcranger.egg-info/dependency_links.txt
      writing top-level names to dist/pyabcranger.egg-info/top_level.txt
      Cloning into 'ranger'...
      Cloning into 'wingetopt'...
      -- The CXX compiler identification is AppleClang 15.0.0.15000100
      -- Detecting CXX compiler ABI info
      -- Detecting CXX compiler ABI info - done
      -- Check for working CXX compiler: /Library/Developer/CommandLineTools/usr/bin/c++ - skipped
      -- Detecting CXX compile features
      -- Detecting CXX compile features - done
      Compiler ID : AppleClang
      -- The C compiler identification is AppleClang 15.0.0.15000100
      -- Detecting C compiler ABI info
      -- Detecting C compiler ABI info - done
      -- Check for working C compiler: /Library/Developer/CommandLineTools/usr/bin/cc - skipped
      -- Detecting C compile features
      -- Detecting C compile features - done
      -- Found Python: /Users/nastyakrouglova/anaconda3/bin/python (found version "3.11.5") found components: Interpreter Development.Module
      -- [pmm] Using vcpkg executable: /Users/nastyakrouglova/.local/share/pmm/2.1.0/vcpkg-6f7ffeb18f99796233b958aaaf14ec7bd4fb64b2/vcpkg
      CMake Error at build/_pmm/2.1.0/vcpkg.cmake:168 (message):
        Failed find portfile in
        /private/var/folders/ld/flvgc_x56cqgh3w4r74wm0140000gn/T/pip-install-q7br6124/pyabcranger_63824d441ed449369860b427234ea34f/pybind11-nodep!
      Call Stack (most recent call first):
        build/_pmm/2.1.0/vcpkg.cmake:224 (_pmm_vcpkg_copy_custom_ports)
        build/_pmm/2.1.0/main.cmake:46 (_pmm_vcpkg)
        build/_pmm/2.1.0/main.cmake:66 (_pmm_project_fn)
        CMakeLists.txt:83 (pmm)

      -- Configuring incomplete, errors occurred!
      [git] .gitmodules found. Cloning the submodules if necessary
      [git] cloning https://github.com/fradav/ranger.git to ranger...
      [git] cloning complete.
      [git] cloning https://github.com/alex85k/wingetopt.git to wingetopt...
      [git] cloning complete.

      [cmake] configuring CMake project...

      Traceback (most recent call last):
        File "/Users/nastyakrouglova/anaconda3/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
          main()
        File "/Users/nastyakrouglova/anaconda3/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
          json_out['return_val'] = hook(**hook_input['kwargs'])
                                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
        File "/Users/nastyakrouglova/anaconda3/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 118, in get_requires_for_build_wheel
          return hook(config_settings)
                 ^^^^^^^^^^^^^^^^^^^^^
        File "/private/var/folders/ld/flvgc_x56cqgh3w4r74wm0140000gn/T/pip-build-env-90ml_iw6/overlay/lib/python3.11/site-packages/setuptools/build_meta.py", line 325, in get_requires_for_build_wheel
          return self._get_build_requires(config_settings, requirements=['wheel'])
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
        File "/private/var/folders/ld/flvgc_x56cqgh3w4r74wm0140000gn/T/pip-build-env-90ml_iw6/overlay/lib/python3.11/site-packages/setuptools/build_meta.py", line 295, in _get_build_requires
          self.run_setup()
        File "/private/var/folders/ld/flvgc_x56cqgh3w4r74wm0140000gn/T/pip-build-env-90ml_iw6/overlay/lib/python3.11/site-packages/setuptools/build_meta.py", line 480, in run_setup
          super(_BuildMetaLegacyBackend, self).run_setup(setup_script=setup_script)
        File "/private/var/folders/ld/flvgc_x56cqgh3w4r74wm0140000gn/T/pip-build-env-90ml_iw6/overlay/lib/python3.11/site-packages/setuptools/build_meta.py", line 311, in run_setup
          exec(code, locals())
        File "<string>", line 23, in <module>
        File "/private/var/folders/ld/flvgc_x56cqgh3w4r74wm0140000gn/T/pip-build-env-90ml_iw6/overlay/lib/python3.11/site-packages/cmaketools/__init__.py", line 98, in setup
          _setup(**setup_args)
        File "/private/var/folders/ld/flvgc_x56cqgh3w4r74wm0140000gn/T/pip-build-env-90ml_iw6/overlay/lib/python3.11/site-packages/setuptools/__init__.py", line 103, in setup
          return distutils.core.setup(**attrs)
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
        File "/private/var/folders/ld/flvgc_x56cqgh3w4r74wm0140000gn/T/pip-build-env-90ml_iw6/overlay/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 185, in setup
          return run_commands(dist)
                 ^^^^^^^^^^^^^^^^^^
        File "/private/var/folders/ld/flvgc_x56cqgh3w4r74wm0140000gn/T/pip-build-env-90ml_iw6/overlay/lib/python3.11/site-packages/setuptools/_distutils/core.py", line 201, in run_commands
          dist.run_commands()
        File "/private/var/folders/ld/flvgc_x56cqgh3w4r74wm0140000gn/T/pip-build-env-90ml_iw6/overlay/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands
          self.run_command(cmd)
        File "/private/var/folders/ld/flvgc_x56cqgh3w4r74wm0140000gn/T/pip-build-env-90ml_iw6/overlay/lib/python3.11/site-packages/setuptools/dist.py", line 963, in run_command
          super().run_command(command)
        File "/private/var/folders/ld/flvgc_x56cqgh3w4r74wm0140000gn/T/pip-build-env-90ml_iw6/overlay/lib/python3.11/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
          cmd_obj.run()
        File "/private/var/folders/ld/flvgc_x56cqgh3w4r74wm0140000gn/T/pip-build-env-90ml_iw6/overlay/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 321, in run
          self.find_sources()
        File "/private/var/folders/ld/flvgc_x56cqgh3w4r74wm0140000gn/T/pip-build-env-90ml_iw6/overlay/lib/python3.11/site-packages/cmaketools/cmakecommands.py", line 72, in find_sources
          mm.run()
        File "/private/var/folders/ld/flvgc_x56cqgh3w4r74wm0140000gn/T/pip-build-env-90ml_iw6/overlay/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 551, in run
          self.add_defaults()
        File "/private/var/folders/ld/flvgc_x56cqgh3w4r74wm0140000gn/T/pip-build-env-90ml_iw6/overlay/lib/python3.11/site-packages/setuptools/command/egg_info.py", line 589, in add_defaults
          sdist.add_defaults(self)
        File "/private/var/folders/ld/flvgc_x56cqgh3w4r74wm0140000gn/T/pip-build-env-90ml_iw6/overlay/lib/python3.11/site-packages/setuptools/command/sdist.py", line 112, in add_defaults
          super().add_defaults()
        File "/private/var/folders/ld/flvgc_x56cqgh3w4r74wm0140000gn/T/pip-build-env-90ml_iw6/overlay/lib/python3.11/site-packages/setuptools/_distutils/command/sdist.py", line 251, in add_defaults
          self._add_defaults_ext()
        File "/private/var/folders/ld/flvgc_x56cqgh3w4r74wm0140000gn/T/pip-build-env-90ml_iw6/overlay/lib/python3.11/site-packages/setuptools/_distutils/command/sdist.py", line 335, in _add_defaults_ext
          build_ext = self.get_finalized_command('build_ext')
                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
        File "/private/var/folders/ld/flvgc_x56cqgh3w4r74wm0140000gn/T/pip-build-env-90ml_iw6/overlay/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 305, in get_finalized_command
          cmd_obj.ensure_finalized()
        File "/private/var/folders/ld/flvgc_x56cqgh3w4r74wm0140000gn/T/pip-build-env-90ml_iw6/overlay/lib/python3.11/site-packages/setuptools/_distutils/cmd.py", line 111, in ensure_finalized
          self.finalize_options()
        File "/private/var/folders/ld/flvgc_x56cqgh3w4r74wm0140000gn/T/pip-build-env-90ml_iw6/overlay/lib/python3.11/site-packages/cmaketools/cmakecommands.py", line 452, in finalize_options
          self.cmake.configure(self.build_base, **cmake_settings)
        File "/private/var/folders/ld/flvgc_x56cqgh3w4r74wm0140000gn/T/pip-build-env-90ml_iw6/overlay/lib/python3.11/site-packages/cmaketools/cmakebuilder.py", line 321, in configure
          cmakeutil.configure(".", build_dir, *args, **kwargs)
        File "/private/var/folders/ld/flvgc_x56cqgh3w4r74wm0140000gn/T/pip-build-env-90ml_iw6/overlay/lib/python3.11/site-packages/cmaketools/cmakeutil.py", line 120, in configure
          sp.run(args, env=env, check=True).check_returncode()
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
        File "/Users/nastyakrouglova/anaconda3/lib/python3.11/subprocess.py", line 571, in run
          raise CalledProcessError(retcode, process.args,
      subprocess.CalledProcessError: Command '['cmake', '.', '-B', 'build', '-DPython_EXECUTABLE=/Users/nastyakrouglova/anaconda3/bin/python', '-DPYABCRANGER=TRUE', '-DUSE_MKL:BOOL=FALSE', '-DCMAKE_BUILD_TYPE:STRING=Release', '-G', 'Ninja', '-DCMAKE_BUILD_TYPE:STRING=Release']' returned non-zero exit status 1.
      [end of output]

  note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error

× Getting requirements to build wheel did not run successfully.
│ exit code: 1
╰─> See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.
anastasiakrouglova commented 7 months ago

I assume that updating pyabcranger inside sbibm to the latest release of 0.0.57  will fix this issue. (see https://github.com/diyabc/abcranger/issues/92)

jan-matthis commented 5 months ago

Thanks for reporting this -- did updating pyabcranger resolve the issue for you?

anastasiakrouglova commented 5 months ago

Unfortunately it didn't resolve the issue. I get the same issue with pyabcranger , which also originates from a subprocess.

fradav commented 2 months ago

I fixed the CI on pyabcranger, this should improve the situation there. Sorry for the delay!