sbi-dev / sbi

Simulation-based inference toolkit
https://sbi-dev.github.io/sbi/
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Test warning on tensor construction - simutils #77

Closed alvorithm closed 4 years ago

alvorithm commented 4 years ago

https://github.com/mackelab/sbi/blob/b38cc27fb33f4743f3c33e01e69ed5813146d09f/sbi/simulators/simutils.py#L150

UserWarning: To copy construct from a tensor, it is recommended to use sourceTensor.clone().detach() or sourceTensor.clone().detach().requiresgrad(True), rather than torch.tensor(sourceTensor).

Present on two lines (return statements).

janfb commented 4 years ago

I think the warning is caused by the cast to tensor, if the parameters/observations are tensor already.

The cast to tensor is necessary because some of the simulators are in numpy, e.g., the Lotka Volterra one.

janfb commented 4 years ago

I suggest to refactor the simulation_wrapper:

janfb commented 4 years ago

Similar problem occurs here: https://github.com/mackelab/sbi/blob/68ec669c2236d405bbd10c66ae6792bf4275ff37/sbi/inference/snpe/base_snpe.py#L262-L263

here we can just remove the cast to tensor because it comes from simulation_wrapper anyways.

jan-matthis commented 4 years ago

Reopening this issue because the UserWarnings are still present on master

alvorithm commented 4 years ago

Did you update pyknos/nflows?

jan-matthis commented 4 years ago

Sure

alvorithm commented 4 years ago

are you sure it worked? Yesterday I had to fight quite a bit, i.e. remove them by hand ultimately via pip uninstall. Have a look at ~/<path-to-miniconda>/envs/sbi/lib/python3.8/site-packages/nflows/transforms/standard.py, you should find there a PiecewiseAffineTransform if it's the right tagged version.

jan-matthis commented 4 years ago

I think so:

# pyknos is at d439bb6df487cc2004a44adc2136b8fc13e89a4c
# nflows is at 6d4f5ddcdcf077e155fb6da8d0c2c6f8c3847b35
# sbi is at fb68a06c97ab5426f3c36fa4a068d99b81c8bf93

Error:

/home/ge57bux/sbibm/src/sbi/sbi/simulators/simutils.py:141: UserWarning: To copy construct from a tensor, it is recommended to use sourceTensor.clone().detach() or sourceTensor.clone().detach().requires_grad_(True), rather than torch.tensor(sourceTensor).
  return torch.tensor(parameters), torch.cat(all_x)

As a side note: It would be good if there was a simple command in sbi that would give the version/commit info of the deps. This is currently not helpful/informative:

from pyknos import version; version.__version__ # == "0.10"
from nflows import version; version.__version__  # == "0.1"
from sbi import version; version.__version__  # == "20200209-Conor_base"
alvorithm commented 4 years ago

How did you get the commit hashes of the dependencies? I guess with that I could solve your request.

As to the warning in simutils, that's true - I had to build that back because as_tensor conflicted with multiround SNPE.

janfb commented 4 years ago

We dont need the cast to Tensor anymore once the user input checks are merged, because then, everything will be Tensor.