sbl-sdsc / mmtf-pyspark

Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
Apache License 2.0
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Update dependencies #352

Closed dkoes closed 1 year ago

dkoes commented 1 year ago

Update dependency requirements to newer version. Move more dependencies into the conda environment to ensure appropriate versions. Less strict on versioning, due to personal preference of having newer code. Replace pandas.read_msgpack with msgpack version since the pandas version is gone. Set necessary environment variable for fork to work on MacOS.

python3.8 because nose doesn't work without alterations in 3.10. Suggest switching to pytest.