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sbmlteam / jsbml

JSBML is a community-driven project to create a free, open-source, pure Java™ library for reading, writing, and manipulating SBML files (the Systems Biology Markup Language) and data streams. It is an alternative to the mixed Java/native code-based interface provided in libSBML.
https://sbml.org/software/jsbml/
GNU Lesser General Public License v2.1
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Improve flattening by testing and merging an existing fork #251

Open draeger opened 2 years ago

draeger commented 2 years ago

The flattening algorithm implemented in JSBML should be improved. A better version has been implemented in the form of a fork. It is nearly ready but requires more extensive testing before a pull request to the master branch can be issued.

luciansmith commented 2 years ago

There are test models in the libsbml source you would be welcome to use; a few at

https://github.com/sbmlteam/libsbml/tree/development/src/sbml/packages/comp/extension/test/test-data

and many more at

https://github.com/sbmlteam/libsbml/tree/development/src/sbml/packages/comp/util/test/test-data