search

sbmlteam / moccasin

MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
http://sbml.org/Software/MOCCASIN
Other
11 stars 2 forks source link

array oprator error #66

Open UpamalikaSamarawickrama opened 1 year ago

UpamalikaSamarawickrama commented 1 year ago

Hi all, I got below error when try to convert ''The MATLAB code uses array operators that may not be translatable – MOCCASIN does not support this kind of input at this time.'' Could anyone please help. Thank you

mhucka commented 1 year ago

Hi – Thank you for getting in touch. The message means pretty much exactly what it says: the Matlab file contains one or more constructs that Moccasin can't translate. Without seeing the actual Matlab code, it's hard to say what exactly the construct is.

A problem with translating Matlab is that people write procedural descriptions of models and simulations. SBML is a declarative format, so it simply cannot store procedural descriptions. Sometimes it's possible for a human author to convert simple Matlab models into a version that can be converted to SBML. It depends very much on the Matlab model.