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The specification documents for SBML.
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fbc-v3: missing references #395

Closed luciansmith closed 7 months ago

luciansmith commented 1 year ago

The intro paragraph in section 1 has missing references

Genome Scale Metabolic Reconstructions (GSR’s; ?)

Level 2 or Level 3 core specification (??)

(This in https://github.com/sbmlteam/sbml-specifications/blob/develop/sbml-level-3/version-1/fbc/spec/sbml-fbc-version-3-rc2.pdf )

luciansmith commented 1 year ago

1.1 SBML issue tracking system (?)

luciansmith commented 1 year ago

2.1: COBRA toolbox (?)

luciansmith commented 1 year ago

3.2 XML Schema 1.0 data types (?).

luciansmith commented 1 year ago

1.4: UML 1.0 (Unified Modeling Language; ??)

luciansmith commented 1 year ago

1.4 XML Schema 1.0 (???),

luciansmith commented 1 year ago

3.4 Hill system (see Table 1) (??).

luciansmith commented 1 year ago

3.9 BiGG database E. coli reconstruction (iJR904; ??)

luciansmith commented 1 year ago

4.1 SBW Flux Balance FBC implementation and CBMPy (??).

luciansmith commented 1 year ago

5.1 COBRA SBML Level 2 Version 1 format (???)

luciansmith commented 1 year ago

fbc 20204: (Reference: SBML Level 3 Specification for Flux Balance Constraints, Version 3, ?? on page ??.)

skeating commented 9 months ago

these look like the bibliography file wasn't picked up when generating the pdf

bgoli commented 7 months ago

Yip bibtex wasn't run, fixed in #402 and #404 (main.pdf)