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sbmlteam / sbml-test-suite

The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML support provided in a software package.
https://sbml.org/software/sbml-test-suite/
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Inconsistent header lines in result files #27

Closed luciansmith closed 8 years ago

luciansmith commented 13 years ago

The result files of the test cases (XXXXX-results.csv) have an inconsistent header line (in release sbml-test-cases-2010-10-06.zip). Some test cases denote the species values with a prefix "caseXXXXX`" and others don't.

For example the header lines of the first 20 test cases are: 00001: time,S1,S2 00002: time,S1,S2 00003: time,S1,S2 00004: time,S1,S2 00005: time,S1,S2 00006: time,S1,S2 00007: time,S1,S2 00008: time,S1,S2 00009: time,S1,S2 00010: time,case00010S1,case00010S2,case00010S3 00011: time,S1,S2,S3 00012: time,S1,S2,S3 00013: time,S1,S2,S3 00014: time,case00014S1,case00014S2,case00014S3 00015: time,case00015S1,case00015S2,case00015S3,case00015S4 00016: time,case00016S1,case00016S2,case00016S3,case00016S4 00017: time,case00017S1,case00017S2,case00017S3,case00017S4 00018: time,S1,S2,S3,S4 00019: time,case00019S1,case00019S2,case00019S3,case00019S4 00020: time,case00020S1,case00020S2,case00020S3,case00020S4

It would help a lot parsing these files, if one kind of referring to species would be used for all test cases.

Reported by: *anonymous

luciansmith commented 13 years ago

This is definitely inconsistent. Our apologies for this. The "cases" variant arose from some of the old Mathematica code we used, and the names should be changed.

I just committed a correction to all the files in SVN. We'll issue a new release of the cases archive soon.

Thanks for reporting this.

Original comment by: mhucka

luciansmith commented 13 years ago

Original comment by: mhucka

luciansmith commented 13 years ago

This was fixed some time ago. Closing the tracker item.

Original comment by: mhucka