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sbmlteam / sbml-test-suite

The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML support provided in a software package.
https://sbml.org/software/sbml-test-suite/
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Can't run this app on MacOS(M2 Ventura 13.2.1). #91

Open TlexCypher opened 1 year ago

TlexCypher commented 1 year ago

Hey, all! I installed binary version of this app v3.4.0, and double-click the icon, but app didn't start. After that, I tried previous version, v3.3.0, but it didn't work well. Of course, I have local java environment, and I checked the doc, but I can't find any of pre-requirements for launching this app. Any help?

fbergmann commented 1 year ago

Indeed, the SWT version of the binary (since they were created in intel / ppc times), probably would not run for you locally. You'd need at least an SWT version. (or there might be a command line switch running java in x64 mode) We would have to prepare a new binary, but this might take a while. For now it would be possible to run the command line version. Would that work for you?

TlexCypher commented 1 year ago

Thank you for answering my issue, Frank!

Probably, what you meant is to clone this repo to my local env, and I'm gonna to compile the source like this link(https://github.com/sbmlteam/sbml-test-suite/tree/release/src/test-runner/testsuite-ui).

I tried this way like below, but I faild to make jar with ant. Here are commands I entered and log. I'm not sure what "multimarkdown" is, but probably this is the source of this problem.

git clone https://github.com/sbmlteam/sbml-test-suite cd sbml-test-suite/src/test-runner/testsuite-ui set TESTRUNNER_IGNORE_HELP=true set TESTRUNNER_IGNORE_ARCHIVE=true ant build

BUILD FAILED /Users/araki/dev/sbml-test-suite/src/test-runner/testsuite-ui/build.xml:426: The following error occurred while executing this line: /Users/araki/dev/sbml-test-suite/src/test-runner/testsuite-ui/build.xml:432: The following error occurred while executing this line: /Users/araki/dev/sbml-test-suite/src/test-runner/testsuite-ui/build.xml:312: The following error occurred while executing this line: /Users/araki/dev/sbml-test-suite/src/test-runner/testsuite-ui/docs/help-system/build.xml:23: The following error occurred while executing this line: /Users/araki/dev/sbml-test-suite/src/test-runner/testsuite-ui/docs/help-system/build.xml:39: Execute failed: java.io.IOException: Cannot run program "multimarkdown" (in directory "/Users/araki/dev/sbml-test-suite/src/test-runner/testsuite-ui/docs/help-system"): error=2, No such file or directory at java.base/java.lang.ProcessBuilder.start(ProcessBuilder.java:1143) at java.base/java.lang.ProcessBuilder.start(ProcessBuilder.java:1073) at java.base/java.lang.Runtime.exec(Runtime.java:594) at org.apache.tools.ant.taskdefs.launcher.Java13CommandLauncher.exec(Java13CommandLauncher.java:58) at org.apache.tools.ant.taskdefs.Execute.launch(Execute.java:424) at org.apache.tools.ant.taskdefs.Execute.execute(Execute.java:438) at org.apache.tools.ant.taskdefs.ExecTask.runExecute(ExecTask.java:660) at org.apache.tools.ant.taskdefs.ExecTask.runExec(ExecTask.java:699) at org.apache.tools.ant.taskdefs.ExecTask.execute(ExecTask.java:527) at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:299) at jdk.internal.reflect.GeneratedMethodAccessor4.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:568) at org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:99) at org.apache.tools.ant.Task.perform(Task.java:350) at java.base/java.util.Vector.forEach(Vector.java:1365) at org.apache.tools.ant.taskdefs.Sequential.execute(Sequential.java:67) at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:299) at jdk.internal.reflect.GeneratedMethodAccessor4.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:568) at org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:99) at org.apache.tools.ant.Task.perform(Task.java:350) at org.apache.tools.ant.taskdefs.MacroInstance.execute(MacroInstance.java:391) at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:299) at jdk.internal.reflect.GeneratedMethodAccessor4.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:568) at org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:99) at org.apache.tools.ant.Task.perform(Task.java:350) at org.apache.tools.ant.Target.execute(Target.java:449) at org.apache.tools.ant.Target.performTasks(Target.java:470) at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1401) at org.apache.tools.ant.helper.SingleCheckExecutor.executeTargets(SingleCheckExecutor.java:36) at org.apache.tools.ant.Project.executeTargets(Project.java:1264) at org.apache.tools.ant.taskdefs.Ant.execute(Ant.java:437) at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:299) at jdk.internal.reflect.GeneratedMethodAccessor4.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:568) at org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:99) at org.apache.tools.ant.Task.perform(Task.java:350) at org.apache.tools.ant.Target.execute(Target.java:449) at org.apache.tools.ant.Target.performTasks(Target.java:470) at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1401) at org.apache.tools.ant.helper.SingleCheckExecutor.executeTargets(SingleCheckExecutor.java:36) at org.apache.tools.ant.Project.executeTargets(Project.java:1264) at org.apache.tools.ant.taskdefs.Ant.execute(Ant.java:437) at org.apache.tools.ant.taskdefs.CallTarget.execute(CallTarget.java:106) at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:299) at jdk.internal.reflect.GeneratedMethodAccessor4.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:568) at org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:99) at org.apache.tools.ant.Task.perform(Task.java:350) at org.apache.tools.ant.Target.execute(Target.java:449) at org.apache.tools.ant.Target.performTasks(Target.java:470) at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1401) at org.apache.tools.ant.helper.SingleCheckExecutor.executeTargets(SingleCheckExecutor.java:36) at org.apache.tools.ant.Project.executeTargets(Project.java:1264) at org.apache.tools.ant.taskdefs.Ant.execute(Ant.java:437) at org.apache.tools.ant.taskdefs.CallTarget.execute(CallTarget.java:106) at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:299) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:77) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:568) at org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:99) at org.apache.tools.ant.Task.perform(Task.java:350) at org.apache.tools.ant.Target.execute(Target.java:449) at org.apache.tools.ant.Target.performTasks(Target.java:470) at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1401) at org.apache.tools.ant.Project.executeTarget(Project.java:1374) at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:41) at org.apache.tools.ant.Project.executeTargets(Project.java:1264) at org.apache.tools.ant.Main.runBuild(Main.java:818) at org.apache.tools.ant.Main.startAnt(Main.java:223) at org.apache.tools.ant.launch.Launcher.run(Launcher.java:284) at org.apache.tools.ant.launch.Launcher.main(Launcher.java:101) Caused by: java.io.IOException: error=2, No such file or directory at java.base/java.lang.ProcessImpl.forkAndExec(Native Method) at java.base/java.lang.ProcessImpl.(ProcessImpl.java:314) at java.base/java.lang.ProcessImpl.start(ProcessImpl.java:244) at java.base/java.lang.ProcessBuilder.start(ProcessBuilder.java:1110) ... 78 more

Total time: 1 second

Sorry for my non-matured issue...

fbergmann commented 1 year ago

I've updated the build files to include the new SWT version, with that with openjdk and ant from homebrew it works with the following commands: 

git clone https://github.com/sbmlteam/sbml-test-suite
git checkout develop
cd sbml-test-suite/src/test-runner/testsuite-ui
export TESTRUNNER_IGNORE_HELP=true
export TESTRUNNER_IGNORE_ARCHIVE=true
export JAVA_HOME=/opt/homebrew/opt/openjdk/
ant build
ant jar-mac-arm
ant start-osx-arm
TlexCypher commented 1 year ago

It worked well! Thank U for great help! Love U!