These ideas will be implemented to the 1.3.0-dev branch before the official release.
Ideas that are already implemented:
Update the ordinate() method so that the user can choose not to perform rarefying. This is because the user may wish to provide an already rarefied/normalized table. The current behavior requires rarefying. Done, see 686ad0c.
Update the ordinate() method so that the user can provide sampling_depth manually for rarefying. Currently, the default behavior is to rarefy based on the sample with minimum depth. Done, see 686ad0c.
Update the ordinate() method so that the user can provide qiime2.Artifact as feature table. The current behavior is to accept only str (i.e. file path). Done, see 7cfec8f.
Add a new plotting method for scree plot from OrdinationResults. Done, see 1e4a8fc.
Add a new plotting method for parallel plot from OrdinationResults. Done, see baf6fc1.
Add a new plotting method for biplot from OrdinationResults. Done, see 147e630.
Update the ordinate() method so that it can output PCoAResults % Properties('biplot') as well as PCoAResults. Done, see 3b51016.
Add a new plotting method for grouped abundance bar chart. Currently, you have to manually create a grouped bar chart with taxa_abundance_bar_plot(), which can be troublesome. Done, see b48ec7f.
These ideas will be implemented to the
1.3.0-devbranch before the official release.Ideas that are already implemented:
Update theDone, see 686ad0c.ordinate()method so that the user can choose not to perform rarefying. This is because the user may wish to provide an already rarefied/normalized table. The current behavior requires rarefying.Update theDone, see 686ad0c.ordinate()method so that the user can providesampling_depthmanually for rarefying. Currently, the default behavior is to rarefy based on the sample with minimum depth.Update theDone, see 7cfec8f.ordinate()method so that the user can provideqiime2.Artifactas feature table. The current behavior is to accept onlystr(i.e. file path).Add a new plotting method for scree plot fromDone, see 1e4a8fc.OrdinationResults.Add a new plotting method for parallel plot fromDone, see baf6fc1.OrdinationResults.Add a new plotting method for biplot fromDone, see 147e630.OrdinationResults.Update theDone, see 3b51016.ordinate()method so that it can outputPCoAResults % Properties('biplot')as well asPCoAResults.Add a new plotting method for grouped abundance bar chart. Currently, you have to manually create a grouped bar chart withDone, see b48ec7f.taxa_abundance_bar_plot(), which can be troublesome.Ideas that will most likely be implemented:
Other ideas: