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sbslee / fuc

Frequently used commands in bioinformatics
https://sbslee-fuc.readthedocs.io
MIT License
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[VCF/VEP] Add function to parse VCF annotated by Ensembl VEP #19

Closed sbslee closed 3 years ago

sbslee commented 3 years ago

https://www.biostars.org/p/9474428/#9474883

sbslee commented 3 years ago

Implemented in 0.12.0-dev a6692dc

sbslee commented 3 years ago

https://bioinformatics.stackexchange.com/questions/13160/filtering-vep-annotation-file

fuc vcf_vep in.vcf 'SIFT.str.contains("deleterious") and PolyPhen.str.contains("damaging")' > out.vcf