Tutorial to read in 10 vcfs and calculate allele frequency?

sbslee / fuc

Frequently used commands in bioinformatics

https://sbslee-fuc.readthedocs.io

MIT License

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Open dbolser opened 8 months ago

dbolser commented 8 months ago

Hi, I have 10 vcfs, each with multiple samples. Can I read them all in (in parallel) and make a single pandas data frame from all variants x samples?

What do I call to get allele frequency per variant?

Many thanks!