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sc932 / ALE

Assembly Likelihood Estimator
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Error 126 #1

Closed sauloal closed 11 years ago

sauloal commented 11 years ago

Hello, when trying to compile using the git clone from you repository 5 minutes ago, I've got this error:

make[1]: Leaving directory `/mnt/nexenta/assembly/nobackup/dev_150/assemblies/mapping/ALE/src/samtools-0.1.18' true gcc -g -O3 -D_GNUSRC ALE.c ALElike.o ALEhelpers.o -o ALE -lz -lm -Isamtools-0.1.18 -Lsamtools-0.1.18 -lbam rm -f ../test/-testPhiX.ale ../test/-tinytestPhiX.ale ../test/-tinytestPhiX-broken.ale_ ./ALE ../test/PhiX-sort.bam ../test/PhiX174.fsa ../test/PhiX-sort.bam-testPhiX.ale > ../test/PhiX-sort.bam-testPhiX.ale.log 2>&1 && ls -l ../test/PhiX-sort.bam-testPhiX.ale make: *\ [../test/PhiX-sort.bam-testPhiX.ale] Error 126

robegan21 commented 11 years ago

Thanks for your report.
Can you please do a a make clean make > log 2>&1 and then attach the full log file and any test/PhiX-sort.bam-testPhiX.ale* files

This test is likely just complaining that the floating point numbers are off in the least significant figure. This happens sometimes when a different random number generator is used or a different CPU architecture. I've been meaning to create a smarter test that uses a diff that allows variance in the numeric floating point numbers, instead of the exact text match.

sauloal commented 11 years ago

no need. I've figured it out. my folder was a NFS mount with no execution permission, therefore the test failed.

Thanks a lot for the quick reply