scalableminds / webknossos-connect

Connect webKnossos with existing datasets (BossDB, Neuroglancer Precomputed)
GNU Affero General Public License v3.0
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Neuroglancer sharded #114

Closed normanrz closed 3 years ago

normanrz commented 3 years ago

This PR adds support for the sharded format of Neuroglancer's precomputed. Most recently published datasets use that format. It can be tested with the datasets that are pre-configured: janelia_flyem_hemibrain,h01_20210601,microns_mm3_broken (which is currently unusable in wk because the color and segmentation layers use different downsampling schemes).

By implementing this, I had to rewrite most of the Neuroglancer implementation. Now, also datasets where one layer is missing mags (e.g. missing mag1 for segmentation) are supported.

Fixes #85

normanrz commented 3 years ago

Gallery:

h01_20210601__522757_334413_3130__PLANE_XY Human cerebral cortex by Shapson-Coe et al. 2021

janelia_flyem_hemibrain__17216_19862_20704__PLANE_XY FlyEM hemibrain by Xu et al. 2020

fafb_v14__124466_67078_3531__PLANE_XY Full adult female fly brain with segmentation by Li et al. 2020