Evaluate segmentation in infer neurons task

[cdfhalle]

Steps to test:

• pull 3702-evaluate-segmentation-in-infer-neurons-task from voxelytics
• in the locally hosted webknossos instance open the ai modal, select Neuron Segmentation and click

TODOs:

• [ ] ...

Issues:

• adds the functionality to evaluate a neuron segmentation using the ai modal.
• In the neuron segmentation tab of the modal the user (a scalable minds employee) can now additionally open the evaluation settings form and type in parameters for the evaluate-split-merger task in voxelytics. Whenever the evaluation settings are used the evaluation should happen subsequently to the inference and the error annotation should be uploaded to the resulting dataset.

---

(Please delete unneeded items, merge only when none are left open)

• [x] Updated changelog
• [ ] Updated migration guide if applicable
• [ ] Updated documentation if applicable
• [ ] Adapted wk-libs python client if relevant API parts change
• [ ] Removed dev-only changes like prints and application.conf edits
• [ ] Considered common edge cases
• [ ] Needs datastore update after deployment

Summary by CodeRabbit

Release Notes

• New Features

  • Enhanced job submission process for neuron inference with additional evaluation parameters.
  • Introduced a new component for configuring evaluation settings in AI jobs.
  • Users can now initiate a split-merger evaluation during neuron inference.

• Improvements

  • Updated API to support new evaluation-related options during job initiation.
  • Improved sorting logic for job listings by creation date.
  • Asynchronous reading of image files from the datastore filesystem for better performance.
  • Enhanced error messages for job initiation on datasets from other organizations.
  • Removed bounding box size restriction for inferral jobs for super users.

• Bug Fixes

  • Fixed performance bottleneck when deleting multiple trees simultaneously.
  • Resolved issue with importing NML files that contain groups but no trees.
  • Fixed critical bug where deleting a non-existing node via the API would delete the entire active tree.
  • Removed Google Analytics integration.

[coderabbitai[bot]]

Walkthrough

The pull request introduces enhancements to the job submission process within the application. Key modifications include updates to the JobController methods to accept additional parameters for neuron inference and TIFF export jobs. The routing configuration for the inferNeurons endpoint has been adjusted to accommodate these new parameters. Furthermore, the frontend JavaScript files have been updated to reflect these changes, allowing for more detailed job configurations. A new component for evaluation settings has been added to improve user interaction when starting AI jobs.

Changes

File Path	Change Summary
app/controllers/JobController.scala	Updated runInferNeuronsJob and runExportTiffJob methods to include new parameters for enhanced job configuration.
conf/webknossos.latest.routes	Modified the POST /jobs/run/inferNeurons route to accept additional parameters for neuron inference jobs.
frontend/javascripts/admin/api/jobs.ts	Updated startNeuronInferralJob function to include new parameters for evaluation settings; improved job sorting logic in getJobs function.
frontend/javascripts/oxalis/view/action-bar/starting_job_modals.tsx	Added CollapsibleEvaluationSettings component for configuring evaluation settings; updated StartJobForm and NeuronSegmentationForm to incorporate new evaluation parameters and improve error handling during job initiation.

Possibly related PRs

• #8181: This PR improves error messages for starting jobs on datasets from other organizations, which relates to the changes in the main PR that enhance the job submission process and error handling in the JobController.
• #8200: This PR modifies the bounding box size restrictions for inferral jobs for super users, which is directly related to the changes in the main PR that enhance job configurations and parameters, including bounding box handling.

Suggested labels

new feature, enhancement, frontend, backend

Suggested reviewers

• MichaelBuessemeyer
• dieknolle3333

Poem

In the meadow where jobs take flight,
New settings bloom, oh what a sight!
With parameters fresh, our jobs now gleam,
Evaluation's sweet, like a rabbit's dream.
Hop along, let the changes flow,
In the world of jobs, we’ll steal the show! 🐇✨

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