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sccn / clean_rawdata

Cleaning Raw EEG data
GNU General Public License v3.0
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clean_rawdata and -nojvm #18

Closed behinger closed 3 years ago

behinger commented 3 years ago

Hi! I cant run clean_rawdata in headless matlab mode using matlab -nojvm (-nodesktop still takes one "virtual" slot of the X which are capped at 75 at least for me).

The reason is this line: hlp_memfree, which calls a java function to get free memory. https://github.com/sccn/clean_rawdata/blob/591ed754ae04d420fa4aa96d9ed482380232b4e6/asr_calibrate_r.m#L276

Which I cannot overwrite in asr_calibrate, but it is correctly skipped in other functions e.g. asr_process_r.

I think the bug is, that asr_calibrate never receives the maxmem option.

(minor: maybe refactor that helper function given that it is defined again in asr_process_r)

Best, Bene

Edit: I got confused, it is asr_calibrate not asr_calibrate_r (or maybe both? whats the difference except one is in private the other not?). Edit Edit: I just got notice that there is "nodesktop" and "nodisplay", which fixes the problem for me. The bug still exists though

arnodelorme commented 3 years ago

I have fixed the problem in 0a9045a (just assigned a fixed amount of RAM)