Using SciView with ImageJ. Trying to Add Volume (An Image Stack) but get a Java Error

[Hbethray05]

I have tried several times to Add Volume (Image Stack) to SciView using ImageJ (Fiji):

• Started Fiji
• Opened my Image Stack
• Plugins > SciView
• (in SciView) Edit > Add Volume
• I use the voxel size that I collect from Fiji by : Image > Show Info. This gives me a 1x1x1 voxel size that I put into SciView
• Error is returned in Console (below, starts after *** and ends before ###):

  ---

  [ERROR] Module threw error java.lang.NoSuchFieldError: list at bdv.viewer.BasicViewerState.notifyListeners(BasicViewerState.java:1622) at bdv.viewer.BasicViewerState.addSources(BasicViewerState.java:724) at bdv.viewer.SynchronizedViewerState.addSources(SynchronizedViewerState.java:496) at bdv.viewer.state.ViewerState.(ViewerState.java:81) at bdv.viewer.state.ViewerState.(ViewerState.java:69) at graphics.scenery.volumes.Volume.(Volume.kt:157) at graphics.scenery.volumes.RAIVolume.(RAIVolume.kt:12) at sc.iview.SciView.addVolume(SciView.java:1949) at sc.iview.SciView.addVolume(SciView.java:2003) at sc.iview.SciView.addVolume(SciView.java:1892) at sc.iview.SciView.addVolume(SciView.java:1711) at sc.iview.commands.demo.VolumeRenderDemo.run(VolumeRenderDemo.java:97) at org.scijava.command.CommandModule.run(CommandModule.java:196) at org.scijava.module.ModuleRunner.run(ModuleRunner.java:165) at org.scijava.module.ModuleRunner.call(ModuleRunner.java:124) at org.scijava.module.ModuleRunner.call(ModuleRunner.java:63) at org.scijava.thread.DefaultThreadService.lambda$wrap$2(DefaultThreadService.java:225) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748)

I get this same error when I try to run a demo and it tries to read an image from: Read image from sun.net.www.protocol.jar.JarURLConnection$JarURLInputStream@25a7058b with 20480 bytes, size=256x20

Any help would be greatly appreciated. My 3D viewer does not work (I guess due to Java 8) and I would like to be able to work on my lattice in a 3D space.

All the best, Holly

[skalarproduktraum]

Hi Holly,

sorry for the problem! We are currently working on a new version of sciview, you can grab a development snapshot by disabling the sciview update site, and adding the development update site at https://sites.imagej.net/SciView-Unstable. Does that one work for you there?

[kephale]

Sincere apologies that this was not properly followed up on. I believe this has been solved for some time. Please let us know if this is still an issue.