I understand that CrossStitch phases structural variants and merges this phasing information with pre-phased SNVs.
I was hoping to find a PS field in the VCF output indicating which of the SVs and SNVs are in the same phase set or haplotype block. Does the output of CrossStitch contain this information, I could not find it?
Our input to CrossStitch was phased ONT Medaka vcf and Sniffles VCF showing the supporting reads.
Hi
Thank you for sharing your research.
I understand that CrossStitch phases structural variants and merges this phasing information with pre-phased SNVs.
I was hoping to find a PS field in the VCF output indicating which of the SVs and SNVs are in the same phase set or haplotype block. Does the output of CrossStitch contain this information, I could not find it?
Our input to CrossStitch was phased ONT Medaka vcf and Sniffles VCF showing the supporting reads.