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schatzlab / genomescope

Fast genome analysis from unassembled short reads
Apache License 2.0
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genome size #58

Open 123123456abc opened 3 years ago

123123456abc commented 3 years ago

I use genomescope2.0 to estimate my diploid genome, and I use NGS_cleandata as input.It's Illumina sequence. It is my results:

微信截图_20210531172006

It shows Genome Haploid Length : 247M ，should I double it as my final genome size ?

mschatz commented 3 years ago

GenomeScope reports the haploid genome size - so if you ran it on a human data set, the reported haploid genome size would be about 3 Gbp, but a typical diploid cell has about 6Gbp of DNA.

Good luck!

Mike

On Mon, May 31, 2021 at 5:21 AM 123123456abc @.***> wrote:

I use genomescope2.0 to estimate my diploid genome, and I use NGS_cleandata as input.It's Illumina sequence. It is my results:

[image: 微信截图_20210531172006] https://user-images.githubusercontent.com/73271841/120171295-7d3a6900-c234-11eb-80b9-d63d01c8f8ee.png

It shows Genome Haploid Length : 247M ，should I double it as my final genome size ?

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