Important MPL file

[Tetrajf]

Hi good folks!

Thank you again for a great piece of software. Just a couple of queries - perhaps one is a bug. We've installed iGenomics on a few different devices and the same problem occurs. We are unable to export the mutations. Our other alternative is to call bases ourselves by frequency but it would be nice to be able to export the mutations detected. Also, I am unable to find the important mutation list that is bulit-in with the demo data for H1N1 (I believe). I would like to create my own for our data but I have no idea what the file format looks like in order to replicate it. Could you kindly provide an example file? We really hope to be able to use your platform for point-of-care work - so it's pretty exciting! Thanks again

Warm Regards Jonathan

[mschatz]

Hi Jonathan,

Im looping in first author Aspyn to help out with this

Thanks for your interest!

Mike

On Mon, Jun 27, 2022 at 12:45 PM Tetrajf @.***> wrote:

Hi good folks!

Thank you again for a great piece of software. Just a couple of queries - perhaps one is a bug. We've installed iGenomics on a few different devices and the same problem occurs. We are unable to export the mutations. Our other alternative is to call bases ourselves by frequency but it would be nice to be able to export the mutations detected. Also, I am unable to find the important mutation list that is bulit-in with the demo data for H1N1 (I believe). I would like to create my own for our data but I have no idea what the file format looks like in order to replicate it. Could you kindly provide an example file? We really hope to be able to use your platform for point-of-care work - so it's pretty exciting! Thanks again

Warm Regards Jonathan

— Reply to this email directly, view it on GitHub https://github.com/schatzlab/iGenomics-data/issues/1, or unsubscribe https://github.com/notifications/unsubscribe-auth/AABP347Y3IRTEK7ZCPZUTMDVRHLB7ANCNFSM5Z6UTXCA . You are receiving this because you are subscribed to this thread.Message ID: @.***>

[Tetrajf]

Thank you so much!

[Tetrajf]

Hi there. Sorry to be a pain. Have you had a chance to check in with Aspyn?

[mschatz]

Hi Jonathan,

Apologies for the delayed response -- thanks for your interest here! Regarding your 2 problems:

1. The important mutations list for H1N1 is here https://github.com/stuckinaboot/iGenomics/blob/master/iGenomics/default_data/impt_muts/flu.H1N1.important.mpl .
2. Exporting mutations: have you tried following this tutorial for using iGenomics and exporting mutations? If so, are you trying to export mutations through Dropbox, email, or by sharing them (e.g. Airdrop, Google Drive, etc.)?

Hopefully this helps. Please let us know if you have any further questions.

Thanks,

Aspyn

On Mon, Jul 11, 2022 at 3:00 PM Michael Schatz @.***> wrote:

Hi Jonathan,

Im looping in first author Aspyn to help out with this

Thanks for your interest!

Mike

On Mon, Jun 27, 2022 at 12:45 PM Tetrajf @.***> wrote:

Hi good folks!

Thank you again for a great piece of software. Just a couple of queries - perhaps one is a bug. We've installed iGenomics on a few different devices and the same problem occurs. We are unable to export the mutations. Our other alternative is to call bases ourselves by frequency but it would be nice to be able to export the mutations detected. Also, I am unable to find the important mutation list that is bulit-in with the demo data for H1N1 (I believe). I would like to create my own for our data but I have no idea what the file format looks like in order to replicate it. Could you kindly provide an example file? We really hope to be able to use your platform for point-of-care work - so it's pretty exciting! Thanks again

Warm Regards Jonathan

— Reply to this email directly, view it on GitHub https://github.com/schatzlab/iGenomics-data/issues/1, or unsubscribe https://github.com/notifications/unsubscribe-auth/AABP347Y3IRTEK7ZCPZUTMDVRHLB7ANCNFSM5Z6UTXCA . You are receiving this because you are subscribed to this thread.Message ID: @.***>