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schatzlab / scikit-ribo

Accurate estimation and robust modelling of translation dynamics at codon resolution
GNU General Public License v2.0
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strand matching #1

Closed hanfang closed 7 years ago

hanfang commented 7 years ago

  1. Investigate if we need to match the strand of the read and the gene during bedtools intersect. makeTrainingData and makeCdsData https://github.com/hanfang/scikit-ribo/blob/master/scripts/bam_preprocess.py

  2. Pairing probability as a vector, left/right 5 codons

hanfang commented 7 years ago

Done