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schmeing / gapless

Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
MIT License
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Polishing both reads (Hifi and ONT) #12

Open OZTaekOppa opened 1 year ago

OZTaekOppa commented 1 year ago

Hi,

Thank you for the great program.

According to your manual, it says:

gapless.sh -j 30 -i assembly.fa.gz -t pb_clr data_pacbio_clr.fq.gz gapless.sh -j 30 -i assembly.fa.gz -t pb_hifi data_pacbio_hifi.fq.gz gapless.sh -j 30 -i assembly.fa.gz -t nanopore data_oxford_nanopore.fq.gz

I might have to pick one of the reads.

Just wondering, is there any chance I could use both reads (HiFi and ONT) for polishing?

Cheers,