Open pclee2007 opened 9 months ago
I had the same issue and solved it by using the conda installation with python 3.9.6 and pandas 1.5.3
Posted an alternative solution to this in https://github.com/schmeing/gapless/issues/18#issuecomment-1910497051
Hi, I got an error in running gapless.sh (in the step of gapless.py extend);
logs/gapless_extend.log describes the following error, "Traceback (most recent call last): File "/analysis/program/gapless.py", line 13362, in
main(sys.argv[1:])
File "/analysis/program/gapless.py", line 13228, in main
GaplessExtend(args[0], prefix, min_length_contig_break, large_reads)
UnboundLocalError: local variable 'large_reads' referenced before assignment"
Thanks, Pyung Cheon