schneebergerlab / fixchr

MIT License
12 stars 1 forks source link

FIxing output paths #10

Closed mbhall88 closed 5 months ago

mbhall88 commented 5 months ago

This PR closes #1

It also cleans up the output file paths. --dir basically wasn't being used, and neither was --prefix. I've following the syri convention of adding fixchr after the prefix too. Also, if --dir doesn't exist, it will be created.

Sorry, my editor auto-formats code on save so it makes it look like I've changed a lot more things than I have