Closed mparker2 closed 4 months ago
Hi both,
I'm having fun using msyd :) Just fyi: there is a quotation mark missing from the ALT= line in the VCF header output of msyd that leads to some issues when trying to load VCFs in IGV
https://github.com/schneebergerlab/msyd/blob/7fb9d538f02eea834e15b3bfe9d868880158d4db/msyd/pyxfiles/io.pyx#L388
Easy to fix :)
Matt
Nice that you're having fun :D
Thanks for noticing, will push a fix!
Hi both,
I'm having fun using msyd :) Just fyi: there is a quotation mark missing from the ALT= line in the VCF header output of msyd that leads to some issues when trying to load VCFs in IGV
https://github.com/schneebergerlab/msyd/blob/7fb9d538f02eea834e15b3bfe9d868880158d4db/msyd/pyxfiles/io.pyx#L388
Easy to fix :)
Matt