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schneebergerlab / msyd

MIT License
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malformed VCF header #11

Closed mparker2 closed 4 months ago

mparker2 commented 4 months ago

Hi both,

I'm having fun using msyd :) Just fyi: there is a quotation mark missing from the ALT= line in the VCF header output of msyd that leads to some issues when trying to load VCFs in IGV

https://github.com/schneebergerlab/msyd/blob/7fb9d538f02eea834e15b3bfe9d868880158d4db/msyd/pyxfiles/io.pyx#L388

Easy to fix :)

Matt

lrauschning commented 4 months ago

Nice that you're having fun :D

Thanks for noticing, will push a fix!