Closed mnshgl0110 closed 3 months ago
I think it would be nicer if pansyri could print the pansynetic regions. I guess the output could be in the following format:
$pansyri -i genomes.tsv --sp --syn pansyn_region_1 Genome1:Chr1:start-end Genome2:Chr1:start-end Genome3:Chr1:start-end pansyn_region_2 Genome1:Chr2:start-end Genome2:Chr2:start-end Genome3:Chr2:start-end
In the end we would need to fit the output in the VCF but for now something like this would be more useful than outputting pansyn object that are not readable from the command line.
Closing this, as -p will do this.
-p
I think it would be nicer if pansyri could print the pansynetic regions. I guess the output could be in the following format:
In the end we would need to fit the output in the VCF but for now something like this would be more useful than outputting pansyn object that are not readable from the command line.