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schneebergerlab / plotsr

Tool to plot synteny and structural rearrangements between genomes
MIT License
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Plotting coverage track #20

Closed shreygandhi1990 closed 2 years ago

shreygandhi1990 commented 2 years ago

Hi, I am trying to include DNA-Seq coverage track in bedgraph format but am not really able to visualise the same. Can you suggest any other way in which I can accomplish this? Also is there a way to increase the width of individual tracks? Thanks!

mnshgl0110 commented 2 years ago

Hi Shrey. Could you please let me know what is the issue in using bedgraph?

Also is there a way to increase the width of individual tracks?

You can decrease the value of -S to decrease the height of chromosomes which in turn increases the height of all tracks. However, it is not possible to regulate the height of individual tracks.

shreygandhi1990 commented 2 years ago

I was able to solve the issue with the begraph. The problem was regarding the "line width" parameter of the track due to which I was just seeing huge blob in the track space.

Thank you for the prompt reply!