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schneebergerlab / plotsr

Tool to plot synteny and structural rearrangements between genomes
MIT License
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Number of re-arrangement #27

Closed Karimi-81 closed 2 years ago

Karimi-81 commented 2 years ago

Hi there, I wonder if it is possible to count the number of all rearrangements through the output of plotsr. I require to find the number of different structural re-arrangement between two close species having large chromosome-level assemblies. I appreciate if you could help me.

mnshgl0110 commented 2 years ago

Plotsr only visualises the structural rearrangements identified by other tools. In case, you used syri for SR identification, then it would have created a summary file with the number and length of rearrangements.