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schneebergerlab / plotsr

Tool to plot synteny and structural rearrangements between genomes
MIT License
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the parameter --reg can not show Translocation #31

Closed aaannaw closed 2 years ago

aaannaw commented 2 years ago

Hello I wang to plot only a specific region. So my command is: software/plotsr/bin/plotsr --sr 03.syri.out --genomes 04.genomes.txt --reg B:Chr1:150000000-191956155 -o 1.Chr1fission.output_plot.pdf. But I can not get the Transloction around 160M on the Chr1. However the Transloction can be plotted when I use --chr Chr1 with the command：software/plotsr/bin/plotsr --sr 03.syri.out --genomes 04.genomes.txt --chr Chr1 -o 1.Chr1fission.output_plot.pdf. Could you give me any suggestions? Thanks very much! image image

mnshgl0110 commented 2 years ago

Using --rtr should solve this. Check https://github.com/schneebergerlab/plotsr/issues/7

aaannaw commented 2 years ago

It works! Thanks!