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schneebergerlab / plotsr

Tool to plot synteny and structural rearrangements between genomes
MIT License
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How to get high-definition pictures #37

Closed zhoudreames closed 1 year ago

zhoudreames commented 1 year ago

This is my code：

plotsr --sr syri.out --genomes genomes.txt -o 1.pdf -S 0.35 --chrord chrom -s 10000 -b pdf -H 12 -W 7 --cfg base.ctg &

I got 134k 1.pdf files: 1.pdf but this picture doesn't look high definition， how to get the high-definition pictures？ thanks~

mnshgl0110 commented 1 year ago

Did you mean to say that plotsr generated 134,000 output plot files all names 1.pdf? I do not think that is possible.

Have you tried the example commands in plotsr.sh (https://github.com/schneebergerlab/plotsr/tree/master/example)? How did the output look?