search

schneebergerlab / plotsr

Tool to plot synteny and structural rearrangements between genomes
MIT License
287 stars 28 forks source link

use for protein sequences #38

Closed LandiMi2 closed 3 months ago

LandiMi2 commented 1 year ago

Is it possible to use this tool for protein sequences? Trying to compare two haplotypes predicted proteins. Plotting synteny blocks for these predicted protein sequences

mnshgl0110 commented 1 year ago

This has not been tested, but I would guess that as long as you can find synteny between the protein haplotypes, plotsr would work. I cannot recall anything specific that would inhibit this but I am not sure how easy this would be. This is an interesting question and an optional feature update. In case you try it out then I would appreciate if you could your experience.

LandiMi2 commented 1 year ago

I will give it a try and share my experience.