lack of the sequence information of variants

schneebergerlab / syri

Synteny and Rearrangement Identifier

https://schneebergerlab.github.io/syri/

MIT License

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lack of the sequence information of variants #149

Closed zhoudreames closed 2 years ago

zhoudreames commented 2 years ago

Some large SVs lack sequencing information instead of being marked as the name of type, how to get it? I want to use the sequence information of SVs to build the pangenome.

mnshgl0110 commented 2 years ago

Duplicate https://github.com/schneebergerlab/syri/issues/132

mnshgl0110 commented 2 years ago

Indel printing added https://github.com/schneebergerlab/syri/commit/9b04c6a6383cebb68ac1c67ff0fda4344f5c0918