schneebergerlab / syri

Synteny and Rearrangement Identifier
https://schneebergerlab.github.io/syri/
MIT License
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re-arragement between two Eukaryotic genomes #157

Closed Karimi-81 closed 1 year ago

Karimi-81 commented 1 year ago

Hi there, I am interested to find the number of re-arrangements between two large genomes. Naturally, the number of chromosomes (or scaffolds) is not equal for different species. Accordingly, if you use the same number of chromosomes for two species, some part of the data would not be captured. In addition, the names of chromosomes are also different. I wonder if you have any solution for these issues? Thanks

mnshgl0110 commented 1 year ago

Check https://github.com/schneebergerlab/syri/issues/142 and https://github.com/schneebergerlab/syri/issues/136