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schneebergerlab / syri

Synteny and Rearrangement Identifier
https://schneebergerlab.github.io/syri/
MIT License
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ERROR - Numerical chromosome id #160

Closed biozzq closed 2 years ago

biozzq commented 2 years ago

Dear all,

I found that syri will report an error if the chromosome name is a number, is this right?

Running SyRI - ERROR - Numerical chromosome id: 30 found in alignments. Please change it to string. Example: for chromosome 1, ">Chr1" is valid but ">1" is invalid. Exiting.

Looking forward to your reply, thanks.

Sincerely yours, Zheng zhuqing

mnshgl0110 commented 2 years ago

Yes. Adding some text to the chromosome name would solve this.

hyBio commented 3 months ago

Yes. Adding some text to the chromosome name would solve this. Why not try to add a parameter to avoid this? The user needs to modify both the .fa and .bam files, which is a time consuming task.It would be great if you could increase the parameters, but if not, that's fine too. hahaha!😀