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schneebergerlab / syri

Synteny and Rearrangement Identifier
https://schneebergerlab.github.io/syri/
MIT License
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Erro in reading BAM file. reference_id -1 out of range #172

Closed anandravi95 closed 1 year ago

anandravi95 commented 1 year ago

Hi @mnshgl0110 , I am writing this issue related to #41. Is there any workaround for it? How to work with mutilple assembly files if everytime one has to remove the unplaced contigs in query genome and reference genome.

Thanks.

mnshgl0110 commented 1 year ago

Answered here https://github.com/schneebergerlab/syri/issues/41#issuecomment-1329285616