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schneebergerlab / syri

Synteny and Rearrangement Identifier
https://schneebergerlab.github.io/syri/
MIT License
305 stars 36 forks source link

Issue installing syri with bioconda #195

Closed gabster34 closed 1 year ago

gabster34 commented 1 year ago

I have been trying to install syri with no success. I have looked through previous issues to try and solve this error but have had no luck. I have tried installing and removing conda in order to get an older python version (3.8 and 3.9) as opposed to the newest 3.10 and nothing seems to be working. Not sure what else to try.

conda create -n syri syri

Collecting package metadata (current_repodata.json): done Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): done Solving environment: | Found conflicts! Looking for incompatible packages. This can take several minutes. Press CTRL-C to abort. failed

UnsatisfiableError:

conda install -c bioconda syri

ollecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: \ Found conflicts! Looking for incompatible packages. This can take several minutes. Press CTRL-C to abort. failed

UnsatisfiableError: The following specifications were found to be incompatible with each other:

Output in format: Requested package -> Available versions

mnshgl0110 commented 1 year ago

Hi, Have you tried the steps described here? I also found that uninstalling cython (even from the base environment) and then creating a new syri_environment and installing cython there worked. Unfortunately, as this issue is caused because of local conda environment, it is not easy to figure out what is causing this.

gabster34 commented 1 year ago

I figured it out! thanks so much it was an error on my part.