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schneebergerlab / syri

Synteny and Rearrangement Identifier
https://schneebergerlab.github.io/syri/
MIT License
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Question of Plotsr #198

Closed Cuteoi closed 1 year ago

Cuteoi commented 1 year ago

I'm successfully obtain the result from syri, but when I run the code like plotsr --sr syri.out --genome genomes.txt -o new.pdf, here is error: Traceback (most recent call last): File "/home/syj_group/syj20stu/miniconda3/bin/plotsr", line 6, in main(sys.argv[1:]) File "/home/syj_group/syj20stu/miniconda3/lib/python3.9/site-packages/plotsr/scripts/plotsr.py", line 334, in main plotsr(args) File "/home/syj_group/syj20stu/miniconda3/lib/python3.9/site-packages/plotsr/scripts/plotsr.py", line 127, in plotsr al, cid = readsyriout(fin) File "/home/syj_group/syj20stu/miniconda3/lib/python3.9/site-packages/plotsr/scripts/func.py", line 438, in readsyriout if l[10] in VARS: IndexError: list index out of range

mnshgl0110 commented 1 year ago

seems to be a plotsr issue. closing here.