i was using syri with two genome files its give me a error

[Hemaprasanth24]

(py3.8) hemaprasanth@hemaprasanth-Aspire-A715-51G:~/main_syri/radiodurans_protealyticus$ syri -c r_pr.sam -r radiodurans.fasta -q protealyticus.fasta -k -F S --prefix r_pr Reading Coords - WARNING - Chromosomes IDs do not match. Reading Coords - WARNING - Matching them automatically. For each reference genome, most similar query genome will be selected. Check mapids.txt for mapping used. multiprocessing.pool.RemoteTraceback: """ Traceback (most recent call last): File "/home/hemaprasanth/anaconda/envs/py3.8/lib/python3.8/multiprocessing/pool.py", line 125, in worker result = (True, func(*args, *kwds)) File "/home/hemaprasanth/anaconda/envs/py3.8/lib/python3.8/multiprocessing/pool.py", line 48, in mapstar return list(map(args)) File "syri/pyxFiles/synsearchFunctions.pyx", line 803, in syri.synsearchFunctions.syri IndexError: list index out of range """

The above exception was the direct cause of the following exception:

Traceback (most recent call last): File "/home/hemaprasanth/anaconda/envs/py3.8/bin/syri", line 6, in main(sys.argv[1:]) File "/home/hemaprasanth/anaconda/envs/py3.8/lib/python3.8/site-packages/syri/scripts/syri.py", line 326, in main syri(args) File "/home/hemaprasanth/anaconda/envs/py3.8/lib/python3.8/site-packages/syri/scripts/syri.py", line 214, in syri startSyri(args, coords[["aStart", "aEnd", "bStart", "bEnd", "aLen", "bLen", "iden", "aDir", "bDir", "aChr", "bChr"]]) File "syri/pyxFiles/synsearchFunctions.pyx", line 505, in syri.synsearchFunctions.startSyri File "syri/pyxFiles/synsearchFunctions.pyx", line 506, in syri.synsearchFunctions.startSyri File "/home/hemaprasanth/anaconda/envs/py3.8/lib/python3.8/multiprocessing/pool.py", line 364, in map return self._map_async(func, iterable, mapstar, chunksize).get() File "/home/hemaprasanth/anaconda/envs/py3.8/lib/python3.8/multiprocessing/pool.py", line 771, in get raise self._value IndexError: list index out of range

[mnshgl0110]

Duplicate https://github.com/schneebergerlab/syri/issues/154

[Hemaprasanth24]

Hii,

as you mentioned above i just did the reverse complement of my query genome i got the out fie but i don't now is it correct because i have i phylogenetic tree based on gene presence and absence that shows the reference and query genome are not closely related but the synteny plot from plotsr with this out file shows syntenic regions

[mnshgl0110]

Please start a separate issue for new questions.