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schneebergerlab / syri

Synteny and Rearrangement Identifier
https://schneebergerlab.github.io/syri/
MIT License
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ERROR - No syntenic region found for chromosome: chr15. This is potentially caused by the two assemblies having different strands for this chromosomes. Reverse complement the chromosome to ensure that the same strands are analysed. Exiting #221

Closed ShirelyI closed 5 months ago

ShirelyI commented 8 months ago

Hi syri term, when I run syri after align the genomes by using minimap2, it showed that " syri.chr15 - ERROR - No syntenic region found for chromosome: chr15. This is potentially caused by the two assemblies having different strands for this chromosomes. Reverse complement the chromosome to ensure that the same strands are analysed. Exiting. " ,Do you know how to solve it? Could the chroder command ignore chromosome orientation? My genomes are chromosome-level, and syri version is 1.6.5. the command is as follows: image the log file is as follows: image Best, Lily

mnshgl0110 commented 7 months ago

This can be solved using fixchr. But as you have already tried that, I am closing this issue. Please start a new issue if you have more questions.