tutorial to write output from EXTRACT pipeline to NWB files

schnitzer-lab / EXTRACT-public

EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time series from both one-photon and two-photon calcium imaging movies.

MIT License

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tutorial to write output from EXTRACT pipeline to NWB files #16

Closed cechava closed 2 years ago

cechava commented 2 years ago

Tutorial covers how to write output from EXTRACT pipeline to new or existing NWB files. This pull request also contains a helper function to handle creation of NWB file.

vijayiyer05 commented 2 years ago

This has already been merged, but for completeness here are a few minor comments on the code:

Suggest use of any(matches()) versus any(strcmp()) for readability
Suggest converting fieldnames outputs to String and using array indexing instead of cell arrays (which may be best reserved for heterogenous lists)
Suggest that adding a utility script to MatNWB could make sense for the one-shot clone/install/generate in write_to_NWB. Seem like a good idea? Maybe capture as issue on MatNWB