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schnitzer-lab / EXTRACT-public

EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time series from both one-photon and two-photon calcium imaging movies.
MIT License
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allows extract to work in a reduce MATLAB environment without some req toolboxes #28

Closed sg-s closed 2 years ago

sg-s commented 2 years ago

I have MATLAB with only these toolboxes:

-----------------------------------------------------------------------------------------------------
MATLAB                                                Version 9.7         (R2019b)
Curve Fitting Toolbox                                 Version 3.5.10      (R2019b)
Image Processing Toolbox                              Version 11.0        (R2019b)
Optimization Toolbox                                  Version 8.4         (R2019b)
Parallel Computing Toolbox                            Version 7.1         (R2019b)
Signal Processing Toolbox                             Version 8.3         (R2019b)
Statistics and Machine Learning Toolbox               Version 11.6        (R2019b)

I was able to get EXTRACT working here by working around some functions in the bioinformatics toolbox.

This PR will use the workaround if the toolbox is missing, but will behave normally (use the built-in) if the toolbox is present.

fatihdinc commented 2 years ago

Happy to approve this soon, could you just let me know what are the reason for the changes to the gitignore?

sg-s commented 2 years ago

@fatihdinc my editor generates these files, shouldn't affect anyone else

sg-s commented 2 years ago

@fatihdinc thank you!

fatihdinc commented 2 years ago

Thank you!