Easier parsing of `compact_output` for cell refinement

[bahanonu]

@fatihdinc Likely already mentioned this previously, but using the output of compact_output=false might be improved to make it easier for users to determine which parameters to change in their movies, especially as it pertains to the Cell refinement module to reduce false negatives/positives.

It would be good to have either:

• A table within the info.summary output classification so that the metrics are in terms of a variable rather than a table. Else, the metrics should be associated with a char array so it is clear what they represent (rather than having to go looking in the code).
• Or a simply GUI with sliders that plot a max projection map of all the cells found and overlays green cells to indicate those that will be kept based on given parameters (as defined by config = get_defaults(config);).

[fatihdinc]

Thanks Biafra. For now, I use the code "plot_hyperparameter_curves(output)" for checking these metrics. Even if compact_output = True, these metrics will include the metrics corresponding to "bad" cells. I am working on a better GUI for this, thank you for the heads up!

Compact_output is set to false by default, as well as the sparse_array option, to prevent memory issues and performance degradation in large movies. Like you suggested, these do not matter much for miniscope etc. movies.

[jbscherrer]

@fatihdinc the plot_hyperparameter_curves function looks like it would be pretty helpful in optimizing cellchecking hyperparameters, however it looks like the cutoffs are hardcoded in and don't always correspond to the current default values. Am I reading that right?

[fatihdinc]

That is indeed correct! I will hopefully focus on user friendliness soon, hopefully supplying these functions with video lectures and tutorials.