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schnitzer-lab / EXTRACT-public

EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time series from both one-photon and two-photon calcium imaging movies.
MIT License
64 stars 17 forks source link

Stevewds matlabtoolboxupdates 1 #41

Closed stevewds closed 1 year ago

stevewds commented 1 year ago

Hi -

This adds a Live Script demo in Matlab online.

Due to some peculiarities in the Matlab File Exchange process, I'll need to update the README one more time to link to the viewable output of the Live Script after this is up.

Best Steve

vijayiyer05 commented 1 year ago

Exciting to see!

@stevewds, somehow the Open in MATLAB Online link (play button) isn't working on my end. Can you check again?

I realize the view link will have to come after File Exchange updates.

stevewds commented 1 year ago

Added a fix in a new pull request, thanks

fatihdinc commented 1 year ago

Accepted both! Thank you so much!

Fatih

On Nov 8, 2023, at 4:53 PM, stevewds @.***> wrote:

Added a fix in a new pull request, thanks

— Reply to this email directly, view it on GitHubhttps://github.com/schnitzer-lab/EXTRACT-public/pull/41#issuecomment-1802993848, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ANNMFCZGUYTK7Q6HQCMAET3YDQSQDAVCNFSM6AAAAAA7DTGTM2VHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQMBSHE4TGOBUHA. You are receiving this because you modified the open/close state.Message ID: @.***>

vijayiyer05 commented 1 year ago

Excellent, just ran EXTRACT in MATLAB Online. An historic day!

One last (promise!) suggestion: turn the visualize_cellfinding to true/1. I just tried that. Makes the experience (and live script output) a lot more interesting & informative.

stevewds commented 1 year ago

and done! That's a nice change.