Chunk size needs to be dynamic

schnitzer-lab / nwbpkg

Repository for NWB standards and converting imaging data to NWB format.

MIT License

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Chunk size needs to be dynamic #5

Open bahanonu opened 4 years ago

bahanonu commented 4 years ago

Chunk size needs to be dynamic or some percentage of the input x-y size else get the below crash (e.g. if image_masks is [250 241 225]). I'll push a commit with this change.

Error using types.untyped.DataPipe/set.chunkSize (line 113)
`chunkSize` must be within `maxSize` bounds

Error in types.untyped.DataPipe (line 48)
            obj.chunkSize = p.Results.chunkSize;

Error in add_processed_ophys (line 72)
    DataPipe=types.untyped.DataPipe(maxSize,...

bahanonu commented 4 years ago

See https://github.com/schnitzer-lab/nwb_schnitzer_lab/pull/6.