Wired z axis values

[Thoronfin]

Hi,

the z scale (height) values from my code seems a bit wired.

filename="CaptureFile.0_00019.spm"
ScanB = pySPM.Bruker(filename)
Height = ScanB.get_channel("Height")
Height2 = Height.correct_plane(inline=False)
fig, ax = plt.subplots(1,1, figsize=(5,5))
p=Height2.zero_min().show(ax=ax, cmap="inferno", title="")
cbar=plt.colorbar(p,fraction=0.046)
cbar.set_label(label=Height2.zscale,rotation=270, labelpad=10)
plt.tight_layout()

This is the result from the code:

This is the same picture opened through Gwyddion:

This is the source file: CaptureFile.0_00019.zip

I plotted the same graphs using a file from an other issue (see below). In that file there is a

[ZSensor] "Height Sensor"

and the python plot is identical to the Gwyddion graph.

e17089.0_00001.zip

Cheers

[scholi]

Hi, Yes there is some issue with the Bruker files.Bruker changed there file format with time and have some encoding issue. I don't have access to an instrument, so I cannot do any testing. If someone can find and correct the problem he can send a push request and I'll merge it to the library

[scholi]

This issue a a duplicata of https://github.com/scholi/pySPM/issues/7 ⇒ closing this one

[scholi]

I have fixed the library. Please update and test

[Thoronfin]

Thanks, it seems work