Bug: Check Input files format in replace GT script

scholl-lab / vcf-filtering

A collection of scripts for filtering annotated variant call format files

MIT License

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Bug: Check Input files format in replace GT script #17

Closed berntpopp closed 1 month ago

berntpopp commented 9 months ago

The script can produce unexpected output if the GT field does not contain VCF style genotypes. Implement a check for correct data format in this column.