Enhance the replace_gt_with_sample script by adding options to specify probands and controls, along with respective counts. This will allow users to easily differentiate and count variants in these groups.
Tasks
Add new options to the replace_gt_with_sample script for specifying probands and controls.
Update the script logic to handle the new options and calculate respective counts.
Add documentation for the new options, including usage examples.
Test the script to ensure it correctly handles the new options and produces accurate counts.
Benefits
Enables differentiation and counting of variants in probands and controls.
Provides more detailed and useful output for genetic analysis.
Increases the flexibility and utility of the replace_gt_with_sample script.
berntpopp
commented
1 month ago
Description
Enhance the
replace_gt_with_samplescript by adding options to specify probands and controls, along with respective counts. This will allow users to easily differentiate and count variants in these groups.Tasks
replace_gt_with_samplescript for specifying probands and controls.Benefits
replace_gt_with_samplescript.