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scholl-lab / vcf-filtering

A collection of scripts for filtering annotated variant call format files
MIT License
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Bug: Samples file required even if empty, causing pipeline failure #49

Open berntpopp opened 1 month ago

berntpopp commented 1 month ago

Description:

The script currently requires the presence of samples.txt even if it is empty. If the file is not provided, the pipeline breaks, leading to an error.

Steps to Reproduce:

  1. Run the script without providing a samples.txt file.
  2. Observe that the pipeline fails with an error.

Expected Behavior:

The script should not require the samples.txt file if it is empty or should handle the absence of this file gracefully.