Open dc623 opened 2 years ago
Hm. Not familiar with this error. Seems like this issue is not unique to PyMOL?
By chance have you peeked a the solutions offered here? Seems like this may be related to conda (if you're using it). https://stackoverflow.com/questions/72110384/libgl-error-mesa-loader-failed-to-open-iris https://askubuntu.com/questions/1352158/libgl-error-failed-to-load-drivers-iris-and-swrast-in-ubuntu-20-04
Hi jarrett,
I have seen it cross referenced with other programs such as chimera and other programs with a similar concept to yours. its fine, I was hoping it was something youd seen before. Basically i replace the MESA loader files into a place pymol can see them, but then it needs extra files as a result. i guess ill have to sit here and manually give it what it wants!
Kind Regards,
Dan
From: Jarrett Johnson @.> Sent: 11 August 2022 14:29 To: schrodinger/pymol-open-source @.> Cc: Dan Carey @.>; Author @.> Subject: Re: [schrodinger/pymol-open-source] MESA loader - pymol is looking for graphics files in the wrong place on Ubuntu 22.04 (Issue #246)
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Hm. Not familiar with this error. Seems like this issue is not unique to PyMOL?
By chance have you peeked a the solutions offered here? Seems like this may be related to conda (if you're using it). https://stackoverflow.com/questions/72110384/libgl-error-mesa-loader-failed-to-open-irishttps://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fstackoverflow.com%2Fquestions%2F72110384%2Flibgl-error-mesa-loader-failed-to-open-iris&data=05%7C01%7Cdan.carey%40canterbury.ac.uk%7C66fa43aa95df4c166a3308da7b9d8f46%7C0320b2da22dd4dab8c216e644ba14f13%7C0%7C0%7C637958213910219504%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=e0IIQ%2FGD%2Bu76vDwk8d4A8lZLVRWnc36B%2BhfyPCTVh6U%3D&reserved=0 https://askubuntu.com/questions/1352158/libgl-error-failed-to-load-drivers-iris-and-swrast-in-ubuntu-20-04https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Faskubuntu.com%2Fquestions%2F1352158%2Flibgl-error-failed-to-load-drivers-iris-and-swrast-in-ubuntu-20-04&data=05%7C01%7Cdan.carey%40canterbury.ac.uk%7C66fa43aa95df4c166a3308da7b9d8f46%7C0320b2da22dd4dab8c216e644ba14f13%7C0%7C0%7C637958213910219504%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=IAYbltwXSLfLK8aIVe0wbAOfYRhgNEv7EB4T7aQIvnU%3D&reserved=0
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Hi Shrodinger,
Have been using pymol for about 4 years on an older laptop to set up molecular systems for Molecular dynamics, i updated to Ubuntu 22.04 recently, have tried re-installing pymol, but the below issue persists upon opening the program in terminal;
libGL error: MESA-LOADER: failed to open iris: /usr/local/lib/pymol/lib/python3.7/site-packages/pymol/../../../libstdc++.so.6: version
GLIBCXX_3.4.29' not found (required by /usr/lib/dri/iris_dri.so) (search paths /usr/lib/x86_64-linux-gnu/dri:\$${ORIGIN}/dri:/usr/lib/dri, suffix _dri) libGL error: failed to load driver: iris libGL error: MESA-LOADER: failed to open iris: /usr/local/lib/pymol/lib/python3.7/site-packages/pymol/../../../libstdc++.so.6: version
GLIBCXX_3.4.29' not found (required by /usr/lib/dri/iris_dri.so) (search paths /usr/lib/x86_64-linux-gnu/dri:\$${ORIGIN}/dri:/usr/lib/dri, suffix _dri) libGL error: failed to load driver: iris libGL error: MESA-LOADER: failed to open swrast: /usr/local/lib/pymol/lib/python3.7/site-packages/pymol/../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /usr/lib/dri/swrast_dri.so) (search paths /usr/lib/x86_64-linux-gnu/dri:\$${ORIGIN}/dri:/usr/lib/dri, suffix _dri) libGL error: failed to load driver: swrast PyMOL(TM) 2.5.1 - Incentive Product Copyright (C) Schrodinger, LLCI know this is likely resolvable quite easily by redirecting pymol to where the files are on ubuntu 22.04, however, i am not an expert on how pymol looks for these files, i have tried moving files to the location pymol is looking for, but it simply creates a new list of errors. but it does remove the previous ones
If nothing else, which file is responsible for Pymol 2.5.1 locating graphics drivers when executing?
Kind Regards,
Dan