Closed SynchronyML closed 1 year ago
Sorry, the markdown format transmission of test.py is wrong, I will re-upload the txt file test.txt
Can you elaborate on what's invalid? Do you get an error message or incorrect rendering? On my end, it seemed to have produced the expected image.
I'm sorry to disturb you. I was sick yesterday, my carelessness caused my mistake. I revisited today and found it ok
No worries. Hope you feel better!
My PyMOL version is 2.5.0. In the operation of my drawing, I found that the same command is valid in the GUI mode terminal, but it wasinvalid in the cmd script. This bothers me a lot.
The command in the GUI terminal is: ray; png test_tets.png The script command of cmd is: cmd.ray(); cmd.png('test_test.png',width=2000, height=2000,dpi=800)
Below is the script I am trying to run with all and only required pdb files
`from pymol import cmd
protein = '5tbm.txt' cmd.load(protein, "protein_tmp")
cmd.color('slate','(name C*)') # cmd.set('ray_trace_gain',1) cmd.set('ambient',1) cmd.set('reflect',0.8) # #default 0.5 cmd.set('direct',1)
cmd.set('spec_direct',0)
cmd.set('light_count',8) cmd.set('edit_light',5)
cmd.set('shininess',0)
cmd.set('specular',0)
cmd.set('specular_intensity',0)
cmd.set('')
cmd.ray(width=800, height=800) # cmd.ray(int width,int height,int renderer=-1,float shift=0) cmd.png('test_test.png') `
pdb file as below 5tbm.txt