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schrodinger / pymol-open-source

Open-source foundation of the user-sponsored PyMOL molecular visualization system.
https://pymol.org/
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Installation Issues in Google Colab #290

Closed RafiBrent closed 1 year ago

RafiBrent commented 1 year ago

I've been using PyMOL for a project in a Google Colab notebook, which previously worked well using the condacolab package to install PyMOL via the command mamba install -c schrodinger pymol-bundle. However, Colab recently updated to Python >3.10 (it currently runs version 3.10.11), and the above installation command no longer works (screenshot of error message attached below). How would you recommend that I resolve this issue? I'm using a relatively limited subset of PyMOL functionality so a more limited installation which is compatible with Python >3.10 would also be beneficial. I would be happy to provide more information if necessary, and I really appreciate your help with this.

PyMOL_Installation_Error_Message
JarrettSJohnson commented 1 year ago

Can you try now? They've been updated to support Python 3.10.

RafiBrent commented 1 year ago

Yes, the command works now. Thanks for your help